Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs35402046 | chr6:26099472 | G/A | 2.26E-8 | 492 | 37.67 | 36.28 | 3.37 | KM Plot |
KIRC | rs35411187 | chr3:48360017 | C/G | 7.23E-6 | 507 | 37.53 | 37.77 | 19.13 | KM Plot |
KIRC | rs35414021 | chr3:48293524 | G/C | 1.89E-5 | 496 | 37.73 | 37.73 | 21.12 | KM Plot |
KIRC | rs35436353 | chr2:67582145 | A/G | 2.23E-7 | 506 | 37.37 | 37.73 | 2.03 | KM Plot |
KIRC | rs35455226 | chr21:44406616 | C/CA | 2.89E-7 | 504 | 37.35 | 40.1 | 3.37 | KM Plot |
KIRC | rs35456569 | chr3:48250899 | T/A | 1.36E-5 | 494 | 37.75 | 37.6 | 21.12 | KM Plot |
KIRC | rs35484309 | chr6:26105369 | C/T | 1.6E-8 | 496 | 37.73 | 36.28 | 3.37 | KM Plot |
KIRC | rs35528636 | chr6:25995701 | A/C | 1.42E-8 | 502 | 37.6 | 36.87 | 3.37 | KM Plot |
KIRC | rs35570926 | chr2:67613281 | G/C | 2.09E-7 | 508 | 37.33 | 37.77 | 2.03 | KM Plot |
KIRC | rs35573719 | chr21:44456264 | C/T | 2.35E-7 | 507 | 37.37 | 40.1 | 3.37 | KM Plot |
KIRC | rs35607813 | chr2:67620781 | C/A | 1.93E-7 | 502 | 37.35 | 38.65 | 2.03 | KM Plot |
KIRC | rs35618989 | chr12:29541301 | G/A | 3.05E-9 | 501 | 37.67 | 37.03 | 6.07 | KM Plot |
KIRC | rs35738994 | chr3:48366895 | AT/A | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs35777125 | chr2:67631129 | G/A | 2.06E-7 | 508 | 37.33 | 37.73 | 2.03 | KM Plot |
KIRC | rs35778847 | chr3:48346985 | G/T | 7.7E-6 | 504 | 37.6 | 37.77 | 19.13 | KM Plot |